Table 1 Identified haplotypes the genus Mus

1

M. m. musculus

MT036347^a

Eastern part of North Caucasus

AB649511^b, AB649518^b, AB649530^b, AB649531^b, AB649534^b, AB649547^b, KF839611^b, KF839612^b, KF697039^b, MG748213^b, MG748214^b

Kazakhstan, Russia (Irkutsk), various provinces of China

2

M. m. musculus

MT036348^a

Eastern part of North Caucasus

AB649508^b, AB649509^b, AB649515^b, AB819917^b, AB649521^b, KF839627^b, KF697034^b, KF697035^b, KF697042^b, KF697043^b, KF697056^b, KF697058^b,

Poland, Hungary, Bulgaria, Ukraina, Moldova, Kazakhstan, Russia (Astrakhan, Kazan, Samara Region, Karelia)

3

M. m. musculus

MT036349^a

Eastern part of North Caucasus

AB649507^b, AB649517^b, AB649529^b, AB649536^b-AB649539^b, AB649543^b, AB649545^b, AB649552^b, KF839629^b, KF697067^b, AY057804^b, KT376856^b, KT376857^b

Slovakia, Czech Republic, Estonia, Kazakhstan, Iran, Russia (Sulak), various provinces of China

4

M. m. musculus

MT036350^a

Eastern part of North Caucasus

5

M. m. musculus

MT036351^a

Eastern part of North Caucasus

6

M. m. musculus

MT036352^a

Eastern part of North Caucasus

7

M. m. musculus

MT036353^a

Eastern part of North Caucasus

8

M. m. musculus

MT036354^a

Eastern part of North Caucasus

AB649520^b, KF697053^b

Rumania, Russia (Primorye)

9

M. m. musculus

MT036355^a

Eastern part of North Caucasus

10

M. m. musculus

MT036356^a

Eastern part of North Caucasus

11

M. m. musculus

MT036357^a

Eastern part of North Caucasus

12

M. m. musculus

MT036358^a

Eastern part of North Caucasus

13

M. m. musculus

MT036359^a

Eastern part of North Caucasus

KF697037^b

Russia (Moscow)

14

M. m. musculus

MT036360^a

Eastern part of North Caucasus

15

M. m. musculus

MT036361^a

Eastern part of North Caucasus

16

M. m. musculus

MT036362^a

Eastern part of North Caucasus

17

M. m. musculus

MT036363^a

Eastern part of North Caucasus

KF697036^b

Russia (Rostov region)

18

M. m. musculus

MT036364^a

Eastern part of North Caucasus

19

M. m. musculus

AB649510^b

Afghanistan

20

M. m. musculus

AB649512^b

Uzbekistan

21

M. m. musculus

AB649513^b

Uzbekistan

22

M. m. musculus

KT376858- KT376860^b

Various provinces of Iran

KT376874^b

23

M. m. musculus

KT376867-KT376869^b

24

M. m. musculus

KT376865-KT376866^b

25

M. m. musculus

KT376861-KT376863^b

26

M. m. musculus

KT376871^b

Iran (Gorgan)

27

M. m. musculus

KT376873^b

Iran (Mashhad)

28

M. m. musculus

KT376872^b

Iran (Bojnord)

29

M. m. musculus

KT376870^b

Iran (Bojnord)

30

M. m. musculus

KT376855^b

Iran (Bojnord)

31

M. m. musculus

KT376854^b

Iran (Bojnord)

32

M. m. domesticus

AY332705^b

Switzerland

33

M. m. domesticus

KT376845-KT376847^b, KT376849-KT376852^b

Various provinces of Iran

34

M. m. domesticus

AB649479^b

Various provinces of Iran

KT376840-844^b

35

M. m. domesticus

KT376848^b

Iran (Kordestan)

36

M. m. domesticus

KT376853^b

Iran (Urmia)

37

M. m. domesticus

KX790793^b

Pakistan (Attock)

38

M. m. bactrianus

KT376793^b

Iran (Zahedan)

39

M. m. bactrianus

KT376773^b

Afghanistan (Kabol)

40

M. m. bactrianus

KT376753^b

Iran (Saravan)

41

M. m. bactrianus

KT376746^b

Iran (Saravan)

42

M. m. bactrianus

KY661853^b

Pakistan

43

M. m. bactrianus

KY661852^b

44

M. m. bactrianus

KY661851^b

45

M. m. bactrianus

KY661850^b

46

M. m. bactrianus

KY661846^b

47

M. m. bactrianus

KY661845^b

48

M. m. bactrianus

KY661836^b

49

M. m. bactrianus

KY661837-839^b

50

M. m. bactrianus

KY661840^b

51

M. m. bactrianus

KY661841^b

52

M. m. bactrianus

KY661831- KY661835^b KY661842- KY661844^b, KY661847^b, KY661854- KY661856^b

53

M. m. bactrianus

AB649490^b

India (Delhi)

54

M. m. castaneus

KY418175^b

Nepal (Lumbini)

55

M. m. castaneus

KY418176^b

Nepal (Lumbini)

56

M. m. castaneus

AB819912^b

India (Ghaziabad)

57

M. m. castaneus

AB819908^b

India (Delhi)

AB819909^b

Various provinces of India

58

M. m. castaneus

AB819911^b, AB820897 ^b, KY418172^b, KY418177^b

Nepal (Lumbini)

59

M. m. castaneus

KY418173^b

Nepal (Lumbini)

60

M. m. castaneus

AB649491^b

Various provinces of India

AB820901^b, AB820910^b, AB973114-116^b, KY418174^b

Nepal (Lumbini)

61

M. macedonicus

MT036344^a

Eastern part of North Caucasus

62

M. macedonicus

MT036345^a

Eastern part of North Caucasus

63

M. macedonicus

MT036346^a

Eastern part of North Caucasus

64

M. macedonicus

AB125770^b

Israel

65

M. macedonicus

AY057808^b

Former Yugoslavia

66

M. spicilegus

AB125775^b

Bulgaria

67

M. spicilegus

KY754048^b

Austria

68

M. spretus

AB033700^b

Unknown