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Table 3 Branch site tests for proteins undergoing positive selection

From: Natural selection in bats with historical exposure to white-nose syndrome

Gene/Foreground branch

n foreground ind.

2ΔlnL

p

acp5

Eptesicus fuscus

1

73

0.001

Eptesicus nilssonii

1

27.5

0.001

Myotis davidii

1

0.7

1.000

Myotis myotis

5

0.7

1.000

Myotis brandtii

1

0.0

1.000

Barbastella barbastellus

4

0.0

1.000

Myotis emarginatus

8

0.0

1.000

Myotis lucifugus

5

−0.7

1.000

anxa1

Myotis davidii

1

8.1

0.153

Myotis emarginatus

4

8.1

0.153

Myotis brandtii

1

3.1

1.000

Eptesicus fuscus

1

3.1

1.000

Neoromicia nana

1

1.9

1.000

Eptesicus nilssonii

2

0.0

1.000

Myotis lucifugus

1

0.0

1.000

Myotis myotis

4

0.0

1.000

Pipistrellus pipistrellus

1

−1.8

1.000

aqp3

Eptesicus fuscus

1

0.9

1.000

Myotis myotis

4

0.8

1.000

Eptesicus nilssoni

2

0.0

1.000

Myotis brandtii

1

0.0

1.000

Myotis davidii

1

0.0

1.000

Myotis emarginatus

11

0.0

1.000

Myotis lucifugus

1

0.0

1.000

Neoromicia nana

4

0.0

1.000

Pipistrellus pipistrellus

3

0.0

1.000

bcam

Eptesicus fuscus

1

0.1

1.000

Myotis brandtii

1

0.0

1.000

Myotis davidii

1

0.0

1.000

Myotis emarginatus

1

0.0

1.000

Myotis lucifugus

2

0.0

1.000

Pipistellus pipistrellus

2

0.0

1.000

lrp4

Eptesicus fuscus

1

0.7

1.000

Myotis lucifugus

1

0.2

1.000

Myotis brandtii

1

0.0

1.000

Myotis davidii

1

0.0

1.000

ptch2

Eptesicus fuscus

1

0.7

1.000

Myotis lucifugus

1

0.2

1.000

Myotis brandtii

1

0.0

1.000

Myotis davidii

1

0.0

1.000

sncg

Myotis davidii

1

0.8

1.000

Eptesicus fuscus

1

0.0

1.000

Myotis brandtii

1

0.0

1.000

  1. Proteins were tested for positive selection using the likelihood ratio test (A-model as alternative hypothesis and A1-model with ω = 1 as null hypothesis). p-values (FDR corrected; significant at α = 0.05) indicating signals of natural selection are marked in bold