Table 1 Maximum likelihood analysis of positive selection in DNA-encoding proteins linked to water metabolism and skin structure
From: Natural selection in bats with historical exposure to white-nose syndrome
Gene | Protein | n | n | M0-M3 | M1-M2 | M7-M8 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
sp. | ind. | LRT | p | ω (prop.) | LRT | p | ω (prop.) | LRT | p | ||
acad10 | ACAD10 | 4 | 4 | 19.6 | 0..495 | 1.01 (0%) | 0.0 | 1.000 | 1.36 (13.3%) | 1.4 | 0.877 |
acp5 | TRAP | 9 | 26 | 191.5 | 0.001 | 6.16 (2.0%) | 34.4 | 0.001 | 6.05 (2.0%) | 38.1 | 0.001 |
anxa1 | ANXA1 | 9 | 16 | 157.4 | 0.001 | 8.57 (15.3%) | 57.2 | 0.001 | 8.03 (15.5%) | 59.1 | 0.001 |
aqp3 | AQP3 | 8 | 28 | 69.7 | 0.001 | 9.22 (1.1%) | 14.8 | 0.004 | 9.19 (1.1%) | 17.1 | 0.001 |
aqp4 | AQP4 | 3 | 3 | 1.3 | 1.000 | 1.00 (3.0%) | 0.0 | 1.000 | 14.87 (2.5%) | 0.6 | 1.000 |
aqp7 | AQP7 | 3 | 3 | 0.1 | 1.000 | 1.00 (5.1%) | 0.0 | 1.000 | 1.00 (0%) | 0.0 | 1.000 |
aqp9 | AQP9 | 4 | 4 | 12.2 | 0.028 | 3.19 (15.5%) | 4.3 | 0.292 | 3.19 (15.5%) | 4.6 | 0.226 |
bcam | BCAM/Lu | 6 | 8 | 73.5 | 0.004 | 5.81 (5.2%) | 10.5 | 0.025 | 5.32 (5.8%) | 11.1 | 0.018 |
ctnnb1 | CTNNB1 | 4 | 4 | 0.0 | 1.000 | 1.00 (0%) | 0.0 | 1.000 | 1.00 (0%) | 0.0 | 1.000 |
fads1 | FADS1 | 3 | 3 | 18.0 | 0.03 | 13.40 (1.5%) | 7.0 | 0.085 | 13.46 (1.6%) | 7.2 | 0.081 |
fgf10 | FGF10 | 5 | 5 | 7.7 | 0.155 | 1.00 (1.7%) | 0.0 | 1.000 | 1.00 (1.8%) | 0.1 | 1.000 |
guca2b | GUCA2B | 7 | 12 | 29.1 | 0.001 | 3.53 (5.1%) | 3.6 | 0.345 | 3.23 (6.3%) | 5.4 | 0.172 |
has2 | HAS2 | 4 | 4 | 0.0 | 1.000 | 1.00 (0%) | 0.0 | 1.000 | 1.01 (0%) | 0.0 | 1.000 |
hyal2 | HYAL2 | 5 | 5 | 17.8 | 0.003 | 1.00 (2.9%) | 0.0 | 1.000 | 1.00 (2.9%) | 0.0 | 1.000 |
hyal3 | HYAL3 | 4 | 4 | 0.4 | 1.000 | 1.00 (8.2%) | 0.0 | 1.000 | 1.01 (0%) | 0.0 | 1.000 |
krt8 | KRT8 | 4 | 4 | 0.0 | 1.000 | 1.00 (0%) | 0.0 | 1.000 | 1.00 (0%) | 0.0 | 1.000 |
lrp4 | LRP4 | 4 | 4 | 14.1 | 0.015 | 52.96 (1.11%) | 9.3 | 0.035 | 52.95 (1.11%) | 10.1 | 0.021 |
psen2 | PSEN2 | 3 | 3 | 12.98 | 0.001 | 11.39 (1.1%) | 4.1 | 0.351 | 10.95 (1.2%) | 3.9 | 0.226 |
ptch2 | PTCH2 | 4 | 4 | 67.2 | 0.001 | 10.75 (0.4%) | 9.110 | 0.035 | 10.45 (1.2%) | 10.7 | 0.018 |
pxn | PXN | 4 | 4 | 6.6 | 0.225 | 1.00 (0%) | 0.000 | 1.000 | 1.00 (0%) | 0.0 | 1.000 |
sncg | SNCG | 3 | 3 | 13.2 | 0.020 | 84.38 (1.1%) | 11.506 | 0.018 | 85.32 (1.1%) | 11.8 | 0.016 |
tgm1 | TGM1 | 5 | 5 | 6.7 | 0.620 | 1.00 (4.8%) | 0.000 | 1.000 | 1.00 (0%) | 0.0 | 1.000 |
tnfsf13 | TNFSF13/APRIL | 4 | 4 | 12.1 | 0.028 | 14.26 (0.6%) | 3.286 | 0.370 | 8.6 (1.1%) | 3.1 | 0.404 |