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Fig. 4 | BMC Zoology

Fig. 4

From: Indigenous house mice dominate small mammal communities in northern Afghan military bases

Fig. 4

Molecular phylogenetic analysis of astrovirus sequences from house mice collected in Afghanistan and Germany as well as reference sequences from the United States and Japan by Maximum Likelihood method. The evolutionary history was inferred by using the Maximum Likelihood method based on the Jukes-Cantor Model. Bootstrapping with 1000 replications was performed and support values below 50% were omitted in the figure for clarity. A discrete Gamma distribution was used to model evolutionary rate differences among sites (5 categories (+G). The analysis involved 46 nucleotide sequences. All positions containing gaps and missing data were eliminated. There were a total of 231 positions in the final dataset. Evolutionary analyses were conducted via CIPRES portal using the FastTreeMP on XSEDE (2.1.9) routine [23]

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