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Table 2 Estimates of sequence divergence across the mitogenomes between teydea (N = 21) and polatzeki (N = 4) Blue Chaffinches

From: Species-level divergences in multiple functional traits between the two endemic subspecies of Blue Chaffinches Fringilla teydea in Canary Islands

 

Nucleotides

Amino acids

Genes

Sequence

Divergence (%)

Sequence

Divergence (%)

12S

975

0.619 ± 0.254

-

-

16S

1598

0.695 ± 0.194

-

-

NAD1

973

2.530 ± 0.813

324

0.933 ± 0.475

NAD2

1038

2.725 ± 0.467

346

1.752 ± 0.711

COI

1548

1.968 ± 0.552

516

0.134 ± 0.097

COII

675

2.813 ± 0.814

225

0.893 ± 0.647

ATP8

168

3.776 ± 1.673

55

3.707 ± 2.547

ATP6

680

2.754 ± 0.609

226

0.443 ± 0.378

COIII

784

2.221 ± 0.829

261

1.046 ± 0.592

NAD3

342

3.194 ± 0.994

114

2.032 ± 1.226

NAD4I

290

2.125 ± 0.782

96

1.047 ± 1.006

NAD4

1369

1.955 ± 0.747

456

0.251 ± 0.024

NAD5

1816

3.155 ± 1.075

605

2.172 ± 0.656

Cyt b

1144

2.147 ± 0.602

380

1.058 ± 0.551

NAD6

518

3.427 ± 0.939

171

1.051 ± 0.737

CR

1311

2.944 ± 0.715

-

-

Whole mitogenome

16788

2.309 ± 0.716

-

-

Synonymous substitutionsa

  

3523

8.072 ± 0.522

Nonsynonymous substitutionsa

  

3523

0.950 ± 0.133

  1. aNAD6 excluded
  2. Divergences (mean ± SE) were calculated as the percentage of substitutions per site (nucleotide or amino acid) from averaging over all individual pair combinations between taxa. All ambiguous positions were excluded for each sequence pair. SE of the mean was calculated by a bootstrap procedure with 100 replicates